1. Affordable HIV drug-resistance testing for monitoring of antiretroviral therapy in sub-Saharan Africa
Seth C Inzaule, Pascale Ondoa, Trevor Peter, Peter N Mugyenyi, Wendy S Stevens, Tobias F Rinke de Wit, Raph L Hamers
The Lancet Infectious Diseases  vol: 16  issue: 11  first page: e267  year: 2016  
doi: 10.1016/S1473-3099(16)30118-9

2. The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt
Nicola J. Mulder, Alan Christoffels, Tulio de Oliveira, Junaid Gamieldien, Scott Hazelhurst, Fourie Joubert, Judit Kumuthini, Ché S. Pillay, Jacky L. Snoep, Özlem Tastan Bishop, Nicki Tiffin, Christos A. Ouzounis
PLOS Computational Biology  vol: 12  issue: 2  first page: e1004395  year: 2016  
doi: 10.1371/journal.pcbi.1004395

3. Very early virological failure and drug resistance mutations in a woman on antiretroviral therapy in Eastern Cape, South Africa: a case report
Olufunso Oladipo Sogbanmu, Oladele Vincent Adeniyi, Yusimi Ordaz Fuentes, Daniel Ter Goon
Journal of Medical Case Reports  vol: 9  issue: 1  year: 2015  
doi: 10.1186/s13256-015-0557-0

4. Workflow Optimization of the ViroSeqTM Human Immunodeficiency Virus-1 (HIV-1) Genotyping System
Danijela Lucic
Journal of Human Virology & Retrovirology  vol: 2  issue: 7  year: 2015  
doi: 10.15406/jhvrv.2015.02.00071

5. 2018 update to the HIV-TRePS system: the development of new computational models to predict HIV treatment outcomes, with or without a genotype, with enhanced usability for low-income settings
Andrew D Revell, Dechao Wang, Maria-Jesus Perez-Elias, Robin Wood, Dolphina Cogill, Hugo Tempelman, Raph L Hamers, Peter Reiss, Ard I van Sighem, Catherine A Rehm, Anton Pozniak, Julio S G Montaner, H Clifford Lane, Brendan A Larder, Peter Reiss, Ard van Sighem, Julio Montaner, Richard Harrigan, Tobias Rinke de Wit, Raph Hamers, Kim Sigaloff, Brian Agan, Vincent Marconi, Scott Wegner, Wataru Sugiura, Maurizio Zazzi, Rolf Kaiser, Eugen Schuelter, Adrian Streinu-Cercel, Gerardo Alvarez-Uria, Maria-Jesus Perez-Elias, Tulio de Oliveira, Jose Gatell, Elisa Lazzari, Brian Gazzard, Mark Nelson, Anton Pozniak, Sundhiya Mandalia, Colette Smith, Lidia Ruiz, Bonaventura Clotet, Schlomo Staszewski, Carlo Torti, Cliff Lane, Julie Metcalf, Catherine A Rehm, Maria-Jesus Perez-Elias, Stefano Vella, Gabrielle Dettorre, Andrew Carr, Richard Norris, Karl Hesse, Emanuel Vlahakis, Hugo Tempelman, Roos Barth, Robin Wood, Carl Morrow, Dolphina Cogill, Chris Hoffmann, Luminita Ene, Gordana Dragovic, Ricardo Diaz, Cecilia Sucupira, Omar Sued, Carina Cesar, Juan Sierra Madero, Pachamuthu Balavskrishnan, Shanmugam Saravanan, Sean Emery, David Cooper, Carlo Torti, John Baxter, Laura Monno, Carlo Torti, Jose Gatell, Bonventura Clotet, Gaston Picchio, Marie-Pierre deBethune, Maria-Jesus Perez-Elias, Sean Emery, Paul Khabo, Lotty Ledwaba
Journal of Antimicrobial Chemotherapy  vol: 73  issue: 8  first page: 2186  year: 2018  
doi: 10.1093/jac/dky179

6. Evaluation of an affordable HIV-1 virological failure assay and antiretroviral drug resistance genotyping protocol
M. Bronze, S.C. Aitken, C.L. Wallis, K. Steegen, L.J. Stuyver, T.F. Rinke de Wit, W. Stevens
Journal of Virological Methods  vol: 194  issue: 1-2  first page: 300  year: 2013  
doi: 10.1016/j.jviromet.2013.08.015

7. Growing Up With HIV in Southern Africa-HIV-Infected Children and Adolescents
Morobadi MD
Journal of Human Virology & Retrovirology  vol: 1  issue: 1  year: 2014  
doi: 10.15406/jhvrv.2014.01.00005

8. Evaluating an enhanced adherence intervention among HIV positive adolescents failing atazanavir/ritonavir-based second line antiretroviral treatment at a public health clinic
Dianah Chawana Tariro, Katzenstein David, Nathoo Kusum, Ngara Bernard, Fungai Brian Nhachi Charles
Journal of AIDS and HIV Research  vol: 9  issue: 1  first page: 17  year: 2017  
doi: 10.5897/JAHR2016.0406

9. Southern African Treatment Resistance Network (SATuRN) RegaDB HIV drug resistance and clinical management database: supporting patient management, surveillance and research in southern Africa
J. Manasa, R. Lessells, T. Rossouw, K. Naidu, C. Van Vuuren, D. Goedhals, G. van Zyl, A. Bester, A. Skingsley, K. Stott, S. Danaviah, T. Chetty, L. Singh, P. Moodley, C. Iwuji, N. McGrath, C. J. Seebregts, T. de Oliveira
Database  vol: 2014  first page: bat082  year: 2014  
doi: 10.1093/database/bat082

10. Implementing antiretroviral resistance testing in a primary health care HIV treatment programme in rural KwaZulu-Natal, South Africa: early experiences, achievements and challenges
Richard J Lessells, Katharine E Stott, Justen Manasa, Kevindra K Naidu, Andrew Skingsley, Theresa Rossouw, Tulio de Oliveira
BMC Health Services Research  vol: 14  issue: 1  year: 2014  
doi: 10.1186/1472-6963-14-116